species:   Rhsol
pid:       PID0629
parent:    Rhi-milR-49
paralog:   
locus:     KB317790.1:1714-1824
matures:   ['CAUUGAUUGGUUUGGCGUUGGACC', 'UUUAGUGCUGAACCAAUCAAUGUC']
srr:       SRR1994874
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram KB317790.1:1714-1824

14 out of bounds
8 alignments
8 proper strand
8 stranded perfect matches

                  **************************                                        ************************** 
CCUCAGUUACAUUGUAAACACAUUGAUUGGUUUGGCGUUGGACCAAUCAAUGUAAGUGAUCAUUGAGUUACAAGCACAUCAAUUGGUUUAGUGCUGAACCAAUCAAUGUCA
...................((((((((((((((((((((((((((((..((((..(((((......)))))....))))..))))))))))))))))))))))))))))..
--------------------CAUUGAUUGGUUUGGCGUUGGACC------------------------------------------------------------------- l=24 a=3 c
--------------------------------------------------------------------------------------UUUAGUGCUGAACCAAUCAAUGUC- l=24 a=0 c*
--------------------CAUUGAUUGGUUUGGCGUUGGACC------------------------------------------------------------------- l=24 a=3 ma
--------------------------------------------------------------------------------------UUUAGUGCUGAACCAAUCAAUGUC- l=24 a=0 ma*

------------------CACAUUGAUUGGUUUGGCGUUGG---------------------------------------------------------------------- l=23 a=2 
--------------------CAUUGAUUGGUUUGGCGUUGGACC------------------------------------------------------------------- l=24 a=3 (c,ma)
---------------------AUUGAUUGGUUUGGCGUUGGACC------------------------------------------------------------------- l=23 a=1 
-----------------------UGAUUGGUUUGGCGUUGGACC------------------------------------------------------------------- l=21 a=1 
---------------------------------------------------------------UGAGUUACAAGCACAUCAAUUGGU------------------------ l=24 a=1 

mb-01011
ax-1011011
ku-01
ss-111111111100
fn-011
